skinregeneration.org | atlas

Filter by any element on the table (e.g. specimen age or anatomical position)

Dataset

Description

Manuscript

Download

Species

Anatomical Position

Selected Cells

Data Type

Age

Sex

Analysis By

Principal Investigator

Phan et al., 2023

Lineage commitment of dermal fibroblast progenitors is controlled by Kdm6b-mediated chromatin demethylation

Mouse

Back Skin

Wounded Whole Cells

scRNA-seq, scATAC-seq

E14.5, E16.5, P5

Male

Quan Phan

Ryan Driskell

Thompson et al., 2021

Parallel Single-Cell Multiomics Analysis of Neonatal Skin Reveals the Transitional Fibroblast States that Restrict Differentiation into Distinct Fates

Mouse

Back Skin

Wounded Whole Cells

scRNA-seq, scATAC-seq

P0

Male

Sean Thompson

Ryan Driskell

Thompson et al., 2021 Fibroblast Subset

Parallel Single-Cell Multiomics Analysis of Neonatal Skin Reveals the Transitional Fibroblast States that Restrict Differentiation into Distinct Fates

Mouse

Back Skin

Wounded Fibroblast Subset

scRNA-seq, scATAC-seq

P0

Male

Sean Thompson

Ryan Driskell

Phan et al., 2020

Lef1 expression in fibroblasts maintains developmental potential in adult skin to regenerate wounds

Mouse

Back Skin

Whole Cells

scRNAseq

P2-P21

Male

Quan Phan

Ryan Driskell

Phan et al., 2020 Fibroblast Subset

Lef1 expression in fibroblasts maintains developmental potential in adult skin to regenerate wounds

Mouse

Back Skin

Fibroblast Subset

scRNA-seq

P2-P21

Male

Quan Phan

Ryan Driskell

Phan et al., 2020

Single-cell transcriptomic analysis of small and large wounds reveals the distinct spatial organization of regenerative fibroblasts

Mouse

Back Skin

Wounded Whole Cells

scRNA-seq

P2-P21

Male

Quan Phan

Ryan Driskell

Phan et al., 2020 Fibroblast Subset

Single-cell transcriptomic analysis of small and large wounds reveals the distinct spatial organization of regenerative fibroblasts

Mouse

Back Skin

Wounded Fibroblast Subset

scRNA-seq

P2-P21

Male

Quan Phan

Ryan Driskell

Human Eccrine Sweat Gland

Excellent single-cell-RNA-seq data from the Kabashima lab.

Human

Trunk and Face

Dissected Eccrine Glands

scRNA-seq

68 years, 74 years, 83 years

Male

Ryan Driskell

Kenji Kabashima

E18.5 Murine Skin

This is a reanalysis of the E18.5 single-cell-RNA-seq analysis from our EMBO paper in 2023.

Mouse

Trunk

Murine Dermal Preparation

scRNA-seq

embryonic day 18.5

Male

Ryan Driskell

Ryan Driskell

7 week Unwounded

A re-analysis of the young timepoint from the Dai Lab, "Wound healing in aged skin exhibits systems-level alterations in cellular composition and cell-cell communication"

Mouse

Back Skin

Whole Cell

scRNA-seq

7 week

Female

Gitano Hobson

Xing Dai

P5 unsorted skin

Post-natal day 5 unsorted dermal preparation performed using 10x genomics.

Mouse

Back skin

Unsorted

Single cell RNA seq

Post-natal day 5

Male

Mason Matich

Ryan Driskell

e14.5 Unsorted Skin

Reanalysis of e14 skin from our recent publication in EMBO

Murine

Back Skin

Whole Cell

scRNA-seq

e14

Male

Halie Harwood

Ryan Driskell